Hot-Deck Imputation

Implementation of the popular Sequential, Random (within a domain) hot-deck algorithm for imputation.

hotdeck(
  data,
  variable = NULL,
  ord_var = NULL,
  domain_var = NULL,
  makeNA = NULL,
  NAcond = NULL,
  impNA = TRUE,
  donorcond = NULL,
  imp_var = TRUE,
  imp_suffix = "imp"
)

Arguments

data

data.frame or matrix

variable

variables where missing values should be imputed (not overlapping with ord_var)

ord_var

variables for sorting the data set before imputation (not overlapping with variable)

domain_var

variables for building domains and impute within these domains

makeNA

list of length equal to the number of variables, with values, that should be converted to NA for each variable

NAcond

list of length equal to the number of variables, with a condition for imputing a NA

impNA

TRUE/FALSE whether NA should be imputed

donorcond

list of length equal to the number of variables, with a donorcond condition as character string. e.g. ">5" or c(">5","<10). If the list element for a variable is NULL no condition will be applied for this variable.

imp_var

TRUE/FALSE if a TRUE/FALSE variables for each imputed variable should be created show the imputation status

imp_suffix

suffix for the TRUE/FALSE variables showing the imputation status

Value

the imputed data set.

Note

If the sequential search leaves unresolved rows, one eligible donor is sampled from the group and used for those rows. If ord_var was supplied, a warning is issued when this fallback is used.

References

A. Kowarik, M. Templ (2016) Imputation with R package VIM. Journal of Statistical Software, 74(7), 1-16.

See also

Other imputation methods: impPCA(), imputeCellEM(), imputeCellIRMI(), imputeCellM(), imputeCellMCD(), imputeCellwise(), imputeRobust(), imputeRobustChain(), irmi(), kNN(), matchImpute(), medianSamp(), rangerImpute(), regressionImp(), sampleCat(), vimmi, vimpute(), xgboostImpute()

Author

Alexander Kowarik

Examples

data(sleep)
sleepI <- hotdeck(sleep)
sleepI2 <- hotdeck(sleep,ord_var="BodyWgt",domain_var="Pred")

# Usage of donorcond in a simple example
sleepI3 <- hotdeck(
  sleep,
  variable = c("NonD", "Dream", "Sleep", "Span", "Gest"),
  ord_var = "BodyWgt", domain_var = "Pred",
  donorcond = list(">4", "<17", ">1.5", "%between%c(8,13)", ">5")
)

set.seed(132)
nRows <- 1e3
# Generate a data set with nRows rows and several variables
x <- data.frame(
  x = rnorm(nRows), y = rnorm(nRows),
  z = sample(LETTERS, nRows, replace = TRUE),
  d1 = sample(LETTERS[1:3], nRows, replace = TRUE),
  d2 = sample(LETTERS[1:2], nRows, replace = TRUE),
  o1 = rnorm(nRows), o2 = rnorm(nRows), o3 = rnorm(100)
)
origX <- x
x[sample(1:nRows,nRows/10), 1] <- NA
x[sample(1:nRows,nRows/10), 2] <- NA
x[sample(1:nRows,nRows/10), 3] <- NA
x[sample(1:nRows,nRows/10), 4] <- NA
xImp <- hotdeck(x,ord_var = c("o1", "o2", "o3"), domain_var = "d2")